PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00953.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 219aa    MW: 23890.8 Da    PI: 4.3645
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00953.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB134.33.7e-4252144294
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       re+d ++P++n++r+++++lP +akis+dake++qe vsefis vtsea++k++re rkti ++d++ a+++lGf+dyvepl+vyl+kyr  +
  Migut.B00953.1.p  52 RETDLYMPMTNIVRVLRRALPPHAKISDDAKEIIQERVSEFISIVTSEANEKAHREYRKTIHPEDVIAAMSSLGFDDYVEPLTVYLNKYRAED 144
                       799***************************************************************************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-4049147IPR009072Histone-fold
SuperFamilySSF471131.93E-3155147IPR009072Histone-fold
PfamPF008086.1E-1958121IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.1E-1585103No hitNo description
PRINTSPR006152.1E-15104122No hitNo description
PRINTSPR006152.1E-15123141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEIGGNSNTQ HKDTTRASAS ASGTIDPNSV APNLPTSNVG DQNQAPPQDF RRETDLYMPM  60
TNIVRVLRRA LPPHAKISDD AKEIIQERVS EFISIVTSEA NEKAHREYRK TIHPEDVIAA  120
MSSLGFDDYV EPLTVYLNKY RAEDPERGAS MQIQLPMAIP SGAQQPPAAV VAPPVPPPPP  180
APLVVMGDGM VIVDDDEVVG PDEYIGFDEV IRKYFLND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-3552141392NF-YB
4csr_A1e-3552141493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B1e-3552141493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858186.11e-158PREDICTED: nuclear transcription factor Y subunit B-9-like
TrEMBLA0A022RVS11e-114A0A022RVS1_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.12e-43NF-YB family protein